FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007914440

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007914440
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463675636
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCACCCGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT11587890.24991371338734739No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGGCGTGAATCTCGTATG10442080.2252022575540286TruSeq Adapter, Index 7 (97% over 35bp)
TTCGCACCCGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5861200.12640733187024733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)