FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007914441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007914441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463675636
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCACCCGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT10902280.23512729920534362No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTACAGGCGCGTGTAGATCTC10047740.21669760539240412Illumina Single End PCR Primer 1 (97% over 34bp)
TTCGCACCCGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA6728620.14511480607534014No Hit
TTCGCACCCGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5622940.12126882595142437No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)