FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007914443

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007914443
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470178375
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCACCCGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT11555040.24575864425921334No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTACAGGCGCGTGTAGATCTC8587300.1826391951777876Illumina Single End PCR Primer 1 (97% over 34bp)
TTCGCACCCGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA7408160.157560627921265No Hit
TTCGCACCCGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5706000.12135819730118383No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)