FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007914444

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007914444
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510212147
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGGTACCTTATCTCGTATG28354950.5557482346652166TruSeq Adapter, Index 22 (97% over 37bp)
GTAGTCGATATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT22209790.4353050026462815No Hit
GTAGTCGATATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA13622770.2670020711992182No Hit
GTAGTCGATATGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6731010.1319257105025373No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)