FastQCFastQC Report
Tue 7 May 2024
EGAF00007914450

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007914450
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460334864
Total Bases69.5 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCTCGTATG20415880.44350062523180955TruSeq Adapter, Index 6 (97% over 35bp)
CAGCGCTGGTTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT15599390.3388704879845903No Hit
CAGCGCTGGTTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA10667880.23174173486021254No Hit
CAGCGCTGGTTGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC4961380.10777762859169407No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)