FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007914453

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007914453
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461822813
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTTCAAGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT21309160.4614141917670923No Hit
TCACTTCAAGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA17208350.3726180152993005No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGTCAGTACGTGTAGATCTC5151500.11154710973535212Illumina Single End PCR Primer 1 (96% over 31bp)
TCACTTCAAGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC4867620.1054001635038328No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)