FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007914466

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007914466
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488541744
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATCCATTGCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT27833290.5697218373216435No Hit
ATATCCATTGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA17943240.367281613503226No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCTCGTATG11684650.23917403463479675TruSeq Adapter, Index 6 (97% over 35bp)
ATATCCATTGCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC7192830.147230612088698No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)