FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007914468

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007914468
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496556607
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCTCGTATG41956350.8449459620220097TruSeq Adapter, Index 6 (97% over 35bp)
ATAGTGATACTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT16783110.3379898638625908No Hit
ATAGTGATACTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA9611980.19357269371707303No Hit
ATAGTGATACTGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6843660.137822353051482No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)