FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007914488

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007914488
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522797718
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGCAGAATTATCTCGTATG47737300.9131122488947053TruSeq Adapter, Index 5 (97% over 36bp)
TAGAGCCCGCCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT28472660.5446209694434817No Hit
TAGAGCCCGCCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA15173250.2902317565204063No Hit
TAGAGCCCGCCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC8058590.15414355729838897No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)