FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007914490

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007914490
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences525560854
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGCAGAATTATCTCGTATG48223390.9175605380989811TruSeq Adapter, Index 5 (97% over 36bp)
TAGAGCCCGCCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT28876310.5494379914376195No Hit
TAGAGCCCGCCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA15429770.2935867441908069No Hit
TAGAGCCCGCCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC8097700.15407730500415084No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)