FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007914494

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007914494
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521829897
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTAAATTACGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT27750020.5317828694663694No Hit
CCGTAAATTACTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA18104350.34693968482990156No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTATG11824480.22659644585292898TruSeq Adapter, Index 19 (97% over 37bp)
CCGTAAATTACGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC6428330.12318822736980897No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)