FastQCFastQC Report
Tue 7 May 2024
EGAF00007914686

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007914686
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61674
Total Bases8.2 Mbp
Sequences flagged as poor quality0
Sequence length21-142
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGTGCACCGCGACCTGGCAGCCAGGAACGTACTGGTGAAAACA870.1410643058663294No Hit
GACCTGGCAGCCAGGAACGTACTGGTGAAAACACCGCAGCATGTCAAGAT740.11998573142653307No Hit
GAAGCCACACTGACGTGCCTCTCCCTCCCTCCAGGAAGCCTACGTGATGG740.11998573142653307No Hit
GGTGCGTTCGGCACGGTGTATAAGGTAAGGTCCCTGGCACAGGCCTCTGG620.10052858578979797No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)