FastQCFastQC Report
Tue 7 May 2024
EGAF00007914690

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007914690
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences82581
Total Bases10.8 Mbp
Sequences flagged as poor quality0
Sequence length25-142
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCTGGCAGCCAGGAACGTACTGGTGAAAACACCGCAGCATGTCAAGAT1150.13925721412915804No Hit
GTCGCTTGGTGCACCGCGACCTGGCAGCCAGGAACGTACTGGTGAAAACA1120.13562441723883217No Hit
GAAGCCACACTGACGTGCCTCTCCCTCCCTCCAGGAAGCCTACGTGATGG1090.1319916203485063No Hit
GCTATCAAGGAATTAAGAGAAGCAACATCTCCGAAAGCCAACAAGGAAAT850.10292924522589941No Hit
GTCGCTATCAAGGAATTAAGAGAAGCAACATCTCCGAAAGCCAACAAGGA850.10292924522589941No Hit
GCTTGGTGCACCGCGACCTGGCAGCCAGGAACGTACTGGTGAAAACACCG840.10171831292912414No Hit
GGCTGCCTCCTGGACTATGTCCGGGAACACAAAGACAATATTGGCTCCCA830.10050738063234885No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)