FastQCFastQC Report
Wed 31 May 2023
EGAF00007914767

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007914767
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422898
Sequences flagged as poor quality0
Sequence length23-142
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTGCCTCCTTCTGCATGGTATTCTTTCTCTTCCGCACCCAGCAGTTTG6080.14376989250362973No Hit
CTTGCAAGGACTCTGGGCTCCCCACCAGACCATGAGAGGCCCTGCGGCCC6060.14329696522565724No Hit
CACCGTGCCGAACGCACCGGAGCCCAGCACTTTGATCTTTTTGAATTCAG5310.12556219230168977No Hit
CTTCTCCACTGGGTGTAAGAGGCTCCACAAGCTGGGGGGGACAAGAACAC4840.11444840126933681No Hit
CCGTGCCGAACGCACCGGAGCCCAGCACTTTGATCTTTTTGAATTCAGTT4790.11326608307440564No Hit
CTTGGGAAAAACACTGGAGTTTCCCAAACACTCAGTGAAACAAAGAGTAA4720.111610837601502No Hit
TATAGTCACATTTTCATTATTTTTATTATAAGGCCTGCTGAAAATGACTG4570.10806388301670851No Hit
TATTCTTTCTCTTCCGCACCCAGCAGTTTGGCCAGCCCAAAATCTGTGAT4460.10546278298785995No Hit
TAACACCTTTTTTGAAGTAAAAGGTGCACTGTAATAATCCAGACTGTGTT4430.10475339207090126No Hit
CATGGTATTCTTTCTCTTCCGCACCCAGCAGTTTGGCCAGCCCAAAATCT4420.10451692843191504No Hit
CTGCGGTGTTTTCACCAGTACGTTCCTGGCTGCCAGGTCGCGGTGCACCA4410.1042804647929288No Hit
CTTCGCATGGTGGCCAGAAGGAGGGGCACATGGACCCCTTCCAGGTGAAG4400.10404400115394255No Hit
GTCACATTTTCATTATTTTTATTATAAGGCCTGCTGAAAATGACTGAATA4380.1035710738759701No Hit
CCCACTAGAGCTAGAAAGGGAAAGACATAGAAAGTGAACATTTAGGATGT4380.1035710738759701No Hit
CTTACTTTGCCTCCTTCTGCATGGTATTCTTTCTCTTCCGCACCCAGCAG4360.10309814659799763No Hit
CCTGAGGTTCAGAGCCATGGACCCCCACACAGCAAAGCAGAAACTCACAT4300.10167936476408024No Hit
AGAAACCTGTCTCTTGGATATTCTCGACACAGCAGGTCAAGAGGAGTACA4250.10049704656914905No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)