FastQCFastQC Report
Wed 8 May 2024
EGAF00007914773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007914773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences321941
Total Bases43 Mbp
Sequences flagged as poor quality0
Sequence length19-142
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGCAAGGACTCTGGGCTCCCCACCAGACCATGAGAGGCCCTGCGGCCC7660.2379317949562187No Hit
CACCGTGCCGAACGCACCGGAGCCCAGCACTTTGATCTTTTTGAATTCAG6580.2043852755629137No Hit
CTTTGCCTCCTTCTGCATGGTATTCTTTCTCTTCCGCACCCAGCAGTTTG6390.1984835730770545No Hit
CCGTGCCGAACGCACCGGAGCCCAGCACTTTGATCTTTTTGAATTCAGTT6360.19755172531612936No Hit
CTGCGGTGTTTTCACCAGTACGTTCCTGGCTGCCAGGTCGCGGTGCACCA5600.17394491537269252No Hit
CTTGGGAAAAACACTGGAGTTTCCCAAACACTCAGTGAAACAAAGAGTAA5430.16866444472745007No Hit
GTCACATTTTCATTATTTTTATTATAAGGCCTGCTGAAAATGACTGAATA5390.16742198104621656No Hit
TATAGTCACATTTTCATTATTTTTATTATAAGGCCTGCTGAAAATGACTG4940.15344426463233946No Hit
CTAGTGGGAAGGCAGCCTGGTCCCTGGTGTCAGGAAAATGCTGGCTGACC4590.14257270742154618No Hit
CTGGGAGCCAATATTGTCTTTGTGTTCCCGGACATAGTCCAGGAGGCAGC4580.1422620915012378No Hit
ACACCTTTTTTGAAGTAAAAGGTGCACTGTAATAATCCAGACTGTGTTTC4190.130148070609211No Hit
CCCAGCAGGCGGCACACGTGGGGGTTGTCCACGCTGGCCATCACGTAGGC4180.12983745468890262No Hit
CCTGCTGAAAATGACTGAATATAAACTTGTGGTAGTTGGAGCTGGTGGCG4130.12828437508736074No Hit
TAACACCTTTTTTGAAGTAAAAGGTGCACTGTAATAATCCAGACTGTGTT4120.12797375916705236No Hit
TGCGGTGTTTTCACCAGTACGTTCCTGGCTGCCAGGTCGCGGTGCACCAA4110.12766314324674397No Hit
CATGGTATTCTTTCTCTTCCGCACCCAGCAGTTTGGCCAGCCCAAAATCT4090.1270419114061272No Hit
CCTTTTTTGAAGTAAAAGGTGCACTGTAATAATCCAGACTGTGTTTCTCC4050.12579944772489368No Hit
CCTGAGGTTCAGAGCCATGGACCCCCACACAGCAAAGCAGAAACTCACAT4050.12579944772489368No Hit
ATAGCGACGGGAATTTTAACTTTCTCACCTTCTGGGATCCAGAGTCCCTA3970.12331452036242666No Hit
CTGCGTGATGAGTTGCACGGTGGAGGTGAGGCAGATGCCCAGCAGGCGGC3880.12051897707965126No Hit
TATTCTTTCTCTTCCGCACCCAGCAGTTTGGCCAGCCCAAAATCTGTGAT3810.11834466563749259No Hit
CCCACTAGAGCTAGAAAGGGAAAGACATAGAAAGTGAACATTTAGGATGT3810.11834466563749259No Hit
ATGTGGAGATGAGCAGGGTCTAGAGCAGAGCAGCTGCCAGACATGAGAAA3700.11492789051410042No Hit
GTTGAGCAGGTACTGGGAGCCAATATTGTCTTTGTGTTCCCGGACATAGT3670.11399604275317528No Hit
GTTCAGAGCCATGGACCCCCACACAGCAAAGCAGAAACTCACATCGAGGA3650.11337481091255851No Hit
CACCTTTTTTGAAGTAAAAGGTGCACTGTAATAATCCAGACTGTGTTTCT3610.112132347231325No Hit
CTAGAAAGGGAAAGACATAGAAAGTGAACATTTAGGATGTGGAGATGAGC3590.11151111539070824No Hit
GTTGTCCACGCTGGCCATCACGTAGGCTTCCTGGAGGGAGGGAGAGGCAC3570.11088988355009148No Hit
CTTTCGGAGATGTTGCTTCTCTTAATTCCTTGATAGCGACGGGAATTTTA3560.11057926762978308No Hit
GTGGGAAGGCAGCCTGGTCCCTGGTGTCAGGAAAATGCTGGCTGACCTAA3540.10995803578916633No Hit
CTTCTCCACTGGGTGTAAGAGGCTCCACAAGCTGGGGGGGACAAGAACAC3530.10964741986885795No Hit
CCTCCTTCTGCATGGTATTCTTTCTCTTCCGCACCCAGCAGTTTGGCCAG3500.10871557210793283No Hit
CTCTGGGCTCCCCACCAGACCATGAGAGGCCCTGCGGCCCAGCCCAGAGG3470.10778372434700768No Hit
CACGGTGGAGGTGAGGCAGATGCCCAGCAGGCGGCACACGTGGGGGTTGT3440.10685187658608253No Hit
ACCGTGCCGAACGCACCGGAGCCCAGCACTTTGATCTTTTTGAATTCAGT3410.1059200288251574No Hit
TCACATTTTCATTATTTTTATTATAAGGCCTGCTGAAAATGACTGAATAT3380.10498818106423227No Hit
CCAGTTGAGCAGGTACTGGGAGCCAATATTGTCTTTGTGTTCCCGGACAT3350.10405633330330714No Hit
CCCACACAGCAAAGCAGAAACTCACATCGAGGATTTCCTTGTTGGCTTTC3350.10405633330330714No Hit
CTTTTTTGAAGTAAAAGGTGCACTGTAATAATCCAGACTGTGTTTCTCCC3350.10405633330330714No Hit
CTTCTCTTAATTCCTTGATAGCGACGGGAATTTTAACTTTCTCACCTTCT3320.10312448554238199No Hit
CTTCCGCACCCAGCAGTTTGGCCAGCCCAAAATCTGTGATCTTGACATGC3320.10312448554238199No Hit
AATACAGCTAGTGGGAAGGCAGCCTGGTCCCTGGTGTCAGGAAAATGCTG3310.1028138696220736No Hit
CTTTGCGATCTGCACACACCAGTTGAGCAGGTACTGGGAGCCAATATTGT3300.10250325370176523No Hit
TGTGACATGTTCTAATATAGTCACATTTTCATTATTTTTATTATAAGGCC3280.10188202186114848No Hit
GTGGAGTATTTGATAGTGTATTAACCTTATGTGTGACATGTTCTAATATA3260.10126079002053172No Hit
ATGGAGAAACCTGTCTCTTGGATATTCTCGACACAGCAGGTCAAGAGGAG3240.10063955817991495No Hit
TATAACACCTTTTTTGAAGTAAAAGGTGCACTGTAATAATCCAGACTGTG3220.10001832633929819No Hit
CCCAAAATCTGTGATCTTGACATGCTGCGGTGTTTTCACCAGTACGTTCC3220.10001832633929819No Hit
ATGATGGAAATATACAGCTTGCAAGGACTCTGGGCTCCCCACCAGACCAT3220.10001832633929819No Hit

[OK]Adapter Content

Adapter graph