FastQCFastQC Report
Wed 8 May 2024
EGAF00007914776

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007914776
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences304671
Total Bases40.2 Mbp
Sequences flagged as poor quality0
Sequence length25-142
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGAAACCCAAGGTACATTTCAGATAACTTAACTTTCAGCATAATTATC6980.22909958611091966No Hit
CTTGGAGGACCGTCGCTTGGTGCACCGCGACCTGGCAGCCAGGAACGTAC6710.22023756773700154No Hit
ACCGTCGCTTGGTGCACCGCGACCTGGCAGCCAGGAACGTACTGGTGAAA5330.17494280715919794No Hit
CATGGCATTAGCAAAGACTCAAAAAATAAAAACTATAATTACTCCTTAAT4870.15984455363326344No Hit
CTCTGGATCCCAGAAGGTGAGAAAGTTAAAATTCCCGTCGCTATCAAGGA4830.15853166202231259No Hit
TTTATGGCAAATACACAAAGAAAGCCCTCCCCAGTCCTCATGTACTGGTC4620.15163898106482074No Hit
GTGAAAACACCGCAGCATGTCAAGATCACAGATTTTGGGCTGGCCAAACT4500.14770030623196825No Hit
CCGTCGCTTGGTGCACCGCGACCTGGCAGCCAGGAACGTACTGGTGAAAA4470.14671563752375513No Hit
CTCATGAAAATGGTCAGAGAAACCTTTATCTGTATCAAAGAATGGTCCTG4270.140151179469001No Hit
GTCCCTGGCACAGGCCTCTGGGCTGGGCCGCAGGGCCTCTCATGGTCTGG4240.13916651076078787No Hit
CCCAGTGGAGAAGCTCCCAACCAAGCTCTCTTGAGGATCTTGAAGGAAAC4180.13719717334436163No Hit
GTAAGGTCCCTGGCACAGGCCTCTGGGCTGGGCCGCAGGGCCTCTCATGG4160.13654072753888621No Hit
GTCCCTCATTGCACTGTACTCCTCTTGACCTGCTGTGTCGAGAATATCCA4110.13489961302519765No Hit
GTGAGAAAGTTAAAATTCCCGTCGCTATCAAGGAATTAAGAGAAGCAACA4040.13260205270603373No Hit
GTCAGCCAGCATTTTCCTGACACCAGGGACCAGGCTGCCTTCCCACTAGC4010.1316173839978206No Hit
AATGGTCCTGCACCAGTAATATGCATATTAAAACAAGATTTACCTCTATT3960.12997626948413207No Hit
ATCACAGATTTTGGGCTGGCCAAACTGCTGGGTGCGGAAGAGAAAGAATA3950.12964804658139437No Hit
GTCCATGGCTCTGAACCTCAGGCCCACCTTTTCTCATGTCTGGCAGCTGC3930.12899160077591895No Hit
ATCCCAGAAGGTGAGAAAGTTAAAATTCCCGTCGCTATCAAGGAATTAAG3910.12833515497044354No Hit
GTGGAGAAGCTCCCAACCAAGCTCTCTTGAGGATCTTGAAGGAAACTGAA3900.12800693206770583No Hit
GTCCATGTGCCCCTCCTTCTGGCCACCATGCGAAGCCACACTGACGTGCC3720.12209891981842709No Hit
CTCCGGTGCGTTCGGCACGGTGTATAAGGTAAGGTCCCTGGCACAGGCCT3700.12144247401295166No Hit
GTGGCTTTAGGTCAGCCAGCATTTTCCTGACACCAGGGACCAGGCTGCCT3550.11651913047188607No Hit
TTTAAACCCACCTATAATGGTGAATATCTTCAAATGATTTAGTATTATTT3550.11651913047188607No Hit
AGGACCGTCGCTTGGTGCACCGCGACCTGGCAGCCAGGAACGTACTGGTG3530.11586268466641066No Hit
CTTGCTTCCTGTAGGAATCCTGAGAAGGGAGAAACACAGTCTGGATTATT3390.11126756402808276No Hit
TTAAAACAAGATTTACCTCTATTGTTGGATCATATTCGTCCACAAAATGA3390.11126756402808276No Hit
CTCCGAAAGCCAACAAGGAAATCCTCGATGTGAGTTTCTGCTTTGCTGTG3320.1089700037089188No Hit
CCTCTGGGCTGGGCCGCAGGGCCTCTCATGGTCTGGTGGGGAGCCCAGAG3310.10864178080618109No Hit
GAGGACCGTCGCTTGGTGCACCGCGACCTGGCAGCCAGGAACGTACTGGT3300.1083135579034434No Hit
AAAATGGTCAGAGAAACCTTTATCTGTATCAAAGAATGGTCCTGCACCAG3290.10798533500070567No Hit
ACTCTGGATCCCAGAAGGTGAGAAAGTTAAAATTCCCGTCGCTATCAAGG3260.10700066629249255No Hit
CCGCGACCTGGCAGCCAGGAACGTACTGGTGAAAACACCGCAGCATGTCA3220.10568777468154174No Hit
AGCAACATCTCCGAAAGCCAACAAGGAAATCCTCGATGTGAGTTTCTGCT3200.10503132887606631No Hit
CTCTGGGCTGGGCCGCAGGGCCTCTCATGGTCTGGTGGGGAGCCCAGAGT3180.1043748830705909No Hit
CTTCGGCTGCCTCCTGGACTATGTCCGGGAACACAAAGACAATATTGGCT3180.1043748830705909No Hit
ATGGCATTAGCAAAGACTCAAAAAATAAAAACTATAATTACTCCTTAATG3180.1043748830705909No Hit
CTCACAGCAGGGTCTTCTCTGTTTCAGGGCATGAACTACTTGGAGGACCG3170.10404666016785319No Hit
AACAAGATTTACCTCTATTGTTGGATCATATTCGTCCACAAAATGATTCT3090.10142087694595153No Hit
GTGCGGCTCCACAGCCCCAGTGTCCCTCACCTTCGGGGTGCATCGCTGGT3060.10043620823773841No Hit

[OK]Adapter Content

Adapter graph