FastQCFastQC Report
Sun 21 May 2023
EGAF00007914813

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007914813
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences326265
Sequences flagged as poor quality0
Sequence length28-142
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGCAAGGACTCTGGGCTCCCCACCAGACCATGAGAGGCCCTGCGGCCC7570.23201998375553612No Hit
GTCACATTTTCATTATTTTTATTATAAGGCCTGCTGAAAATGACTGAATA6670.2044350451320246No Hit
CACCGTGCCGAACGCACCGGAGCCCAGCACTTTGATCTTTTTGAATTCAG6230.1909490751383078No Hit
TATAGTCACATTTTCATTATTTTTATTATAAGGCCTGCTGAAAATGACTG5760.176543607190474No Hit
CCGTGCCGAACGCACCGGAGCCCAGCACTTTGATCTTTTTGAATTCAGTT5610.17194611741988874No Hit
ACACCTTTTTTGAAGTAAAAGGTGCACTGTAATAATCCAGACTGTGTTTC5610.17194611741988874No Hit
CTTGGGAAAAACACTGGAGTTTCCCAAACACTCAGTGAAACAAAGAGTAA5570.1707201201477327No Hit
TAACACCTTTTTTGAAGTAAAAGGTGCACTGTAATAATCCAGACTGTGTT5040.15447565629166476No Hit
GTGCAGGACCATTCTTTGATACAGATAAAGGTTTCTCTGACCATTTTCAT4940.15141066311127457No Hit
CTTCGCATGGTGGCCAGAAGGAGGGGCACATGGACCCCTTCCAGGTGAAG4800.14711967265872833No Hit
CTGCGGTGTTTTCACCAGTACGTTCCTGGCTGCCAGGTCGCGGTGCACCA4760.14589367538657227No Hit
CCTTTTTTGAAGTAAAAGGTGCACTGTAATAATCCAGACTGTGTTTCTCC4750.14558717606853325No Hit
CTTTGCCTCCTTCTGCATGGTATTCTTTCTCTTCCGCACCCAGCAGTTTG4720.1446676781144162No Hit
CTGGGAGCCAATATTGTCTTTGTGTTCCCGGACATAGTCCAGGAGGCAGC4600.14098968629794797No Hit
CTAGTGGGAAGGCAGCCTGGTCCCTGGTGTCAGGAAAATGCTGGCTGACC4510.13823119243559684No Hit
CCTGCTGAAAATGACTGAATATAAACTTGTGGTAGTTGGAGCTGGTGGCG4420.13547269857324568No Hit
CTTTTTTGAAGTAAAAGGTGCACTGTAATAATCCAGACTGTGTTTCTCCC4360.13363370266501157No Hit
TATAACACCTTTTTTGAAGTAAAAGGTGCACTGTAATAATCCAGACTGTG4280.13118170812069943No Hit
CCCACTAGAGCTAGAAAGGGAAAGACATAGAAAGTGAACATTTAGGATGT4260.1305687094846214No Hit
TCACATTTTCATTATTTTTATTATAAGGCCTGCTGAAAATGACTGAATAT4180.12811671494030924No Hit
CACCTTTTTTGAAGTAAAAGGTGCACTGTAATAATCCAGACTGTGTTTCT4130.12658421835011416No Hit
GTGGAGTATTTGATAGTGTATTAACCTTATGTGTGACATGTTCTAATATA4090.1253582210779581No Hit
GTTGAGCAGGTACTGGGAGCCAATATTGTCTTTGTGTTCCCGGACATAGT3870.11861523608109972No Hit
TGCGGTGTTTTCACCAGTACGTTCCTGGCTGCCAGGTCGCGGTGCACCAA3860.1183087367630607No Hit
CTTATGTGTGACATGTTCTAATATAGTCACATTTTCATTATTTTTATTAT3730.11432424562855348No Hit
CCCAGCAGGCGGCACACGTGGGGGTTGTCCACGCTGGCCATCACGTAGGC3710.11371124699247545No Hit
GTTCAGAGCCATGGACCCCCACACAGCAAAGCAGAAACTCACATCGAGGA3700.11340474767443642No Hit
CTTCTCCACTGGGTGTAAGAGGCTCCACAAGCTGGGGGGGACAAGAACAC3630.1112592524481633No Hit
TGTGACATGTTCTAATATAGTCACATTTTCATTATTTTTATTATAAGGCC3620.11095275313012429No Hit
CTTGTGGTAGTTGGAGCTGGTGGCGTAGGCAAGAGTGCCTTGACGATACA3610.11064625381208527No Hit
GTTGGAGCTGGTGGCGTAGGCAAGAGTGCCTTGACGATACAGCTAATTCA3520.10788775994973411No Hit
CCCACACAGCAAAGCAGAAACTCACATCGAGGATTTCCTTGTTGGCTTTC3500.10727476131365608No Hit
ATAGTCACATTTTCATTATTTTTATTATAAGGCCTGCTGAAAATGACTGA3480.10666176267757803No Hit
ACCGTGCCGAACGCACCGGAGCCCAGCACTTTGATCTTTTTGAATTCAGT3460.1060487640415No Hit
GTTGTCCACGCTGGCCATCACGTAGGCTTCCTGGAGGGAGGGAGAGGCAC3460.1060487640415No Hit
ATACAGCTAGTGGGAAGGCAGCCTGGTCCCTGGTGTCAGGAAAATGCTGG3440.10543576540542197No Hit
CACGGTGGAGGTGAGGCAGATGCCCAGCAGGCGGCACACGTGGGGGTTGT3430.10512926608738295No Hit
CCTGAGGTTCAGAGCCATGGACCCCCACACAGCAAAGCAGAAACTCACAT3420.10482276676934395No Hit
GTGGGAAGGCAGCCTGGTCCCTGGTGTCAGGAAAATGCTGGCTGACCTAA3390.10390326881522689No Hit
CCCAGAATGTCTGGAGAGCATCCTCCCCTGCATGTGTTAAACAATACAGC3340.1023707722250318No Hit
CCCTGCGGCCCAGCCCAGAGGCCTGTGCCAGGGACCTTACCTTATACACC3320.10175777358895377No Hit
CATGGTATTCTTTCTCTTCCGCACCCAGCAGTTTGGCCAGCCCAAAATCT3300.10114477495287574No Hit
CTGCCAGACATGAGAAAAGGTGGGCCTGAGGTTCAGAGCCATGGACCCCC3280.10053177631679769No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)