FastQCFastQC Report
Wed 8 May 2024
EGAF00007914824

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007914824
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences303667
Total Bases41.6 Mbp
Sequences flagged as poor quality0
Sequence length21-142
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGGAGGACCGTCGCTTGGTGCACCGCGACCTGGCAGCCAGGAACGTAC5740.18902284410225675No Hit
CTTGAAACCCAAGGTACATTTCAGATAACTTAACTTTCAGCATAATTATC5620.18507114701301097No Hit
CATGGCATTAGCAAAGACTCAAAAAATAAAAACTATAATTACTCCTTAAT4810.15839719166060193No Hit
CTCATGAAAATGGTCAGAGAAACCTTTATCTGTATCAAAGAATGGTCCTG4550.1498351813005694No Hit
GTCCCTCATTGCACTGTACTCCTCTTGACCTGCTGTGTCGAGAATATCCA4510.14851794893748746No Hit
CTCTGGATCCCAGAAGGTGAGAAAGTTAAAATTCCCGTCGCTATCAAGGA4100.13501631721589766No Hit
CCCAGTGGAGAAGCTCCCAACCAAGCTCTCTTGAGGATCTTGAAGGAAAC4060.13369908485281573No Hit
GTCCATGGCTCTGAACCTCAGGCCCACCTTTTCTCATGTCTGGCAGCTGC3910.12875946349125852No Hit
GTAAGGTCCCTGGCACAGGCCTCTGGGCTGGGCCGCAGGGCCTCTCATGG3820.1257956906743242No Hit
GTCAGCCAGCATTTTCCTGACACCAGGGACCAGGCTGCCTTCCCACTAGC3630.119538836949685No Hit
GTCCCTGGCACAGGCCTCTGGGCTGGGCCGCAGGGCCTCTCATGGTCTGG3600.11855091267737358No Hit
CCTCCACCGTGCAACTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTG3550.11690437222352115No Hit
CTCCACAGCCCCAGTGTCCCTCACCTTCGGGGTGCATCGCTGGTAACATC3440.11328198322504586No Hit
GTGAAAACACCGCAGCATGTCAAGATCACAGATTTTGGGCTGGCCAAACT3430.11295267513427537No Hit
ATCACAGATTTTGGGCTGGCCAAACTGCTGGGTGCGGAAGAGAAAGAATA3380.11130613468042297No Hit
CCTCACCTCCACCGTGCAACTCATCACGCAGCTCATGCCCTTCGGCTGCC3360.110647518498882No Hit
GTGGCTTTAGGTCAGCCAGCATTTTCCTGACACCAGGGACCAGGCTGCCT3360.110647518498882No Hit
ACCGTCGCTTGGTGCACCGCGACCTGGCAGCCAGGAACGTACTGGTGAAA3340.10998890231734104No Hit
CCTCTGGGCTGGGCCGCAGGGCCTCTCATGGTCTGGTGGGGAGCCCAGAG3300.10867166995425911No Hit
GTACTCATGAAAATGGTCAGAGAAACCTTTATCTGTATCAAAGAATGGTC3210.10570789713732476No Hit
CTTCACAGCCCTGCGTAAACGTCCCTGTGCTAGGTCTTTTGCAGGCACAG3200.10537858904655428No Hit
CCCAACCAAGCTCTCTTGAGGATCTTGAAGGAAACTGAATTCAAAAAGAT3170.10439066477424283No Hit
CATGAAAATGGTCAGAGAAACCTTTATCTGTATCAAAGAATGGTCCTGCA3160.10406135668347236No Hit
TTTATGGCAAATACACAAAGAAAGCCCTCCCCAGTCCTCATGTACTGGTC3150.10373204859270187No Hit
CCGTCGCTTGGTGCACCGCGACCTGGCAGCCAGGAACGTACTGGTGAAAA3070.10109758386653801No Hit
GTACGTATTTTGAAACTCAAGATCGCATTCATGCGTCTTCACCTGGAAGG3060.10076827577576754No Hit
TTAAAACAAGATTTACCTCTATTGTTGGATCATATTCGTCCACAAAATGA3060.10076827577576754No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)