FastQCFastQC Report
Wed 15 Mar 2023
EGAF00007917025

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007917025
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48265454
Sequences flagged as poor quality0
Sequence length1-98
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG3402900.7050384318357391No Hit
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA628700.13025879752420852No Hit
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG570890.11828128665276826No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC568530.1177923240916785No Hit
CCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGT523830.10853104168459703No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)