FastQCFastQC Report
Wed 15 Mar 2023
EGAF00007917027

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007917027
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50285707
Sequences flagged as poor quality0
Sequence length1-98
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG4808950.9563254226494221No Hit
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG1056900.21017900772479942No Hit
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA1056370.21007360998225602No Hit
CCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGT728320.14483638462118073No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC721280.14343638441833978No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)