FastQCFastQC Report
Wed 15 Mar 2023
EGAF00007917041

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007917041
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46202827
Sequences flagged as poor quality0
Sequence length1-98
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG4439320.9608329810641241No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC708310.15330447204020653No Hit
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA702970.15214869860668917No Hit
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG670850.14519674304777933No Hit
CCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGT646860.1400044200758538No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)