FastQCFastQC Report
Wed 15 Mar 2023
EGAF00007917446

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007917446
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25044060
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTAATTGTCAGTTCAGTGTTTTAATCTGACGCAGGCTTATGCGGAGGAG779350.3111915560017026No Hit
GGCAAATTTAAAGTTGAACTAAGATTCTATCTTGGACAACCAGCTATCAC382350.1526709327481247No Hit
GTCCAATTGGGTGTGAGGAGTTCAGTTATATGTTTGGGATTTTTTAGGTA272130.10866049674054447No Hit
CTGGTTTCGGGGGTCTTAGCTTTGGCTCTCCTTGCAAAGTTATTTCTAGT264280.10552602094069412No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)