FastQCFastQC Report
Wed 15 Mar 2023
EGAF00007917447

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007917447
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25044060
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC405500.16191464163558145No Hit
AAAAAATTTAACACCCATAGTAGGCCTAAAAGCAGCCACCAATTAAGAAA289520.11560425905384351No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC285220.11388728504882993No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)