FastQCFastQC Report
Wed 15 Mar 2023
EGAF00007917502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007917502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2899
Sequences flagged as poor quality0
Sequence length150
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA50.17247326664367024No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG50.17247326664367024No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT50.17247326664367024No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT50.17247326664367024No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT50.17247326664367024No Hit
GGTTCCCCCACGCCCCAGTGACGGTAGTGCGCAATTACCCGTGGCTAGAC40.1379786133149362No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC40.1379786133149362No Hit
CACTAGAAGTCGACGAACAACGAAGAGCGACGATGCCCGTTTCAGGTGGT40.1379786133149362No Hit
GTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGT40.1379786133149362No Hit
TGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAA30.10348395998620215No Hit
GGCGCCACCGGCCGCTTGAGCAAAGAAATTCGTGATCCGCTTGCGCGCCA30.10348395998620215No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA30.10348395998620215No Hit
GCTAAGAGCATCGAGGGGGCGCCGAGAGGCAAGGGGCGGGGACGGGCGGT30.10348395998620215No Hit
AGTTAAGAATGCTCACTGTACACTGAATGTTAATTACTCAGCTAATTCAC30.10348395998620215No Hit
GAGTCACGGCCAACTGGCGGCGGGCGAACCCGCCCGCGTCGACGGCATCT30.10348395998620215No Hit
GCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGC30.10348395998620215No Hit
ATATAAGGGCAACGTCCACACCATCATCGACGGACAGGCCTATCGCTCGA30.10348395998620215No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC30.10348395998620215No Hit
CTTATGGGCAGGGTGGGTCTCGCAAGTACCTCATCGCCTCCTGCGACCAG30.10348395998620215No Hit
CCCTTAGACGTCTTGGTATACGGACAACTGATGGACCCACGTTGCGAGTC30.10348395998620215No Hit
GTTCAGGATAATCACCTGAGCAGTGAAGCCAGCTGCTTCCATTGGTGGGT30.10348395998620215No Hit
TGTCATAATGATGGACACCACAATTGCACTCCATCTCCTCTGTCTCTTAT30.10348395998620215No Hit
GTACAGTATGGTGCATTGGTCTGCCTCAAGAGACTGACTTTACCTTCTGT30.10348395998620215No Hit
GCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTG30.10348395998620215No Hit
ATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATC30.10348395998620215No Hit
ATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGC30.10348395998620215No Hit
GCCATCGTCGCAAAACCGACAACTAGAGACAGCAGGATGTCCCAGTTGCC30.10348395998620215No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC30.10348395998620215No Hit
GCCCACTCCTGCGGCTCCTCTCTTGCGAAAAGGAACCACCTCCTGTCGCC30.10348395998620215No Hit
CAATGCAACAGCTCAGGTGGAGATTGAGGAGTCTCTGGTCACCTTTCCAT30.10348395998620215No Hit
ATATGGACCTGGCGCCGCGACAACTGGCCGTCATTCACGGCCCTGCTGGG30.10348395998620215No Hit
CAGTATACGGGCGTCGGCATCCAGACCGTCGGCTGATCGTGGTTTTACTA30.10348395998620215No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)