FastQCFastQC Report
Wed 22 Feb 2023
EGAF00007919182

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007919182
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55947199
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCTCGTTGGTGTAGATC1539400.2751522913595728Illumina Single End PCR Primer 1 (96% over 33bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1042570.1863489180217941No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)