FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007919320

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007919320
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473380746
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACTAACCCACGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT18583920.39257870450016147No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTATG13263540.28018756808499345TruSeq Adapter, Index 3 (97% over 35bp)
TACTAACCCACTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA12014930.25381112564303576No Hit
TACTAACCCACGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5333510.11266850299821869No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)