FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007919322

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007919322
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423894967
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTTAAGATCTCGTATG79355121.8720467610553158TruSeq Adapter, Index 11 (97% over 36bp)
CTGCACATTGGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT15078810.35572043015080196No Hit
CTGCACATTGGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA7088220.16721642274181567No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)