FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007919335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007919335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438351403
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTAAGATTAGTGTAGATCTC37142890.8473313817590313Illumina Single End PCR Primer 1 (96% over 31bp)
AAATGATACAAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT11760560.2682906891483133No Hit
AAATGATACAATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA4521320.10314373283755636No Hit
AAATGATACAAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC4417160.10076755702775747No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)