FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007919336

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007919336
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464067051
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCTCGTATG32567520.701784794456351TruSeq Adapter, Index 1 (97% over 35bp)
AAATGATACAAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT15374790.33130535699247476No Hit
AAATGATACAAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5697970.12278333460049935No Hit
AAATGATACAATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA4871900.10498267415240391No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)