FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007919347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007919347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507284593
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGTACTCCGTGTAGATCTC30093210.5932214464080915Illumina Single End PCR Primer 1 (96% over 33bp)
GTCTTTGATTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT21877020.4312573317203032No Hit
GTCTTTGATTATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA15623270.30797840532878157No Hit
GTCTTTGATTAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC7028280.13854708179556322No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)