FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007919364

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007919364
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515293400
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTAAGAATCAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT31427610.6098973904963657No Hit
TGTAAGAATCATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA22717120.4408579655784452No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTAAGTATCTCGTATG14827550.2877496587381092TruSeq Adapter, Index 15 (97% over 40bp)
TGTAAGAATCAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6322550.12269805900871232No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)