FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007919366

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007919366
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479997843
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGTTCTGTCGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT16453250.34277758202342584No Hit
ACGTTCTGTCGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA8423790.1754964136370088No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC6603760.137578951578747No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCAGGATCTCGTATG6052930.1261032750099254TruSeq Adapter, Index 14 (97% over 39bp)
ACGTTCTGTCGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5475530.11407405428694813No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)