FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007919368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007919368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478862417
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGTTCTGTCGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT16185920.33800773302282355No Hit
ACGTTCTGTCGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA8207420.1713941146481746No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCAGGATCTCGTATG6051740.12637742669205965TruSeq Adapter, Index 14 (97% over 39bp)
ACGTTCTGTCGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5348980.11170181267326311No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)