FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007919370

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007919370
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494424788
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTTCAAGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT30007290.6069131388291155No Hit
TCACTTCAAGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA20771210.42010858889218966No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCGTAGTGATCTCGTATG8180810.16546116211309372TruSeq Adapter, Index 16 (97% over 36bp)
TCACTTCAAGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC7224340.14611605597735525No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)