FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007919374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007919374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences352478193
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCCGCTTTGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT16775360.47592618020485594No Hit
TAGCCGCTTTGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA10321690.2928320164192399No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCAAGCTAGATCTCGTATG8274670.23475693431054329TruSeq Adapter, Index 2 (97% over 35bp)
TAGCCGCTTTGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC4332020.12290178757243006No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)