FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007919375

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007919375
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences352478193
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCCGCTTTGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT14052500.3986771459646016No Hit
TAGCCGCTTTGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA12150990.34473026250449484No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCGCTATGTGTGTAGATCTC9696260.2750882236848054Illumina Single End PCR Primer 1 (96% over 33bp)
TAGCCGCTTTGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC4313660.12238090428476521No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)