FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007919377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007919377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences264431017
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCCGCTTTGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT11176000.4226433088974581No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCGCTATGTGTGTAGATCTC9241070.34946997159565435Illumina Single End PCR Primer 1 (96% over 33bp)
TAGCCGCTTTGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA9209440.34827381842274574No Hit
TAGCCGCTTTGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC3050280.11535257983748555No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC2930200.11081150892370542No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)