FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007919390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007919390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471204147
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTCGCGCATCTCGTATG31924120.6775008285315451TruSeq Adapter, Index 8 (97% over 35bp)
CCTGCCCCTGTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT20908850.44373230017434456No Hit
CCTGCCCCTGTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA12191940.25874008277775196No Hit
CCTGCCCCTGTGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC4838190.10267715237234532No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)