FastQCFastQC Report
Mon 13 May 2024
EGAF00007919397

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007919397
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429997251
Total Bases64.9 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGTATGTTCGTGTAGATCTC31299440.7278986069610942Illumina Single End Sequencing Primer (100% over 31bp)
GTTGACGAATAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT17436410.4055004993508668No Hit
GTTGACGAATATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA10757910.25018555293043027No Hit
GTTGACGAATAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5417260.12598359611373422No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)