FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007919399

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007919399
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425774903
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGTATGTTCGTGTAGATCTC33576570.7885990875324091Illumina Single End PCR Primer 1 (96% over 31bp)
GTTGACGAATAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT18205090.4275754599843101No Hit
GTTGACGAATATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA11145700.2617744710049291No Hit
GTTGACGAATAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5552490.13040904855775398No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC4699830.1103829738879654No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)