FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007919400

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007919400
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484451311
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTCGCGCATCTCGTATG27671270.571187844303305TruSeq Adapter, Index 8 (97% over 35bp)
GGGTTTTACCAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT15015280.30994404719445584No Hit
GGGTTTTACCATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA8114200.16749258007478074No Hit
GGGTTTTACCAGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC6033450.1245419273929883No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)