FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007919403

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007919403
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496580048
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC21878830.4405901946346423Illumina Single End PCR Primer 1 (96% over 33bp)
GGGTTTTACCAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT13405590.2699582887792544No Hit
GGGTTTTACCATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA8700070.17519974946717956No Hit
GGGTTTTACCAGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5776240.11632042050952478No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)