FastQCFastQC Report
Wed 15 Mar 2023
EGAF00007919962

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007919962
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47129904
Sequences flagged as poor quality0
Sequence length151
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAG777190.1649037944146884No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAG644640.13677940018719326No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA521370.11062403182488978No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)