FastQCFastQC Report
Wed 15 Mar 2023
EGAF00007920093

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007920093
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48861143
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC1637780.3351906851626455No Hit
AGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCAAGGC601790.12316330790706226No Hit
GAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCAAGG575360.11775410165906272No Hit
CCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGAC533910.1092708780881364No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)