FastQCFastQC Report
Sun 21 May 2023
EGAF00007923488

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923488
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497851
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGAAGTGATTGACGTTGAAACCACTGAAG18600.37360575754593245No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9220.18519597228889767No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7190.1444207202556588No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6480.13015942520955065No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6450.12955683527802495No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6110.12272748272073371No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5120.1028420149803857No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5080.10203856173835142No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)