FastQCFastQC Report
Sun 21 May 2023
EGAF00007923490

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923490
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472806
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44110.9329407833233928No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG18060.38197484803492343No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6410.1355735756314429No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6380.1349390659170992No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6320.13367004648841174No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5540.11717279391547486No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4930.10427109639048575No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4790.10131005105688169No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)