FastQCFastQC Report
Sun 21 May 2023
EGAF00007923496

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923496
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479941
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT38100.7938475770980182No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36350.7573847618769807No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG23280.48505962191186003No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA21520.4483884477467022No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG17960.37421266363990574No Hit
GTGCAGGACGCCACCGTTGGCGCAGAAAAAG17930.3735875868075451No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG16460.3429588220218735No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG14390.29982852058898907No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG13180.2746170883504431No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13010.27107498630039945No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12980.27044990946803876No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC12870.26815796108271645No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT12640.26336570536795145No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC12590.2623239106473504No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10810.22523601859395218No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG10150.211484328282018No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10110.21065089250553712No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9200.19169022859059762No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8980.18710633181995287No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8710.1814806403287071No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7790.1623116174696473No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC7680.16001966908432494No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC7260.15126859343127594No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7110.14814320926947272No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7000.14585126088415035No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6760.1408506462252652No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6350.13230792951633638No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6080.12668223802509057No Hit
ACCACCCTGGGTCGTAACTGCTACAACCTGT5920.12334849491916713No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5860.12209834125444585No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5650.11772280342792135No Hit
CAGAACAAATACCAGCTGACCGATCTGAAGG5510.11480577821023834No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA5470.11397234243375749No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5470.11397234243375749No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5310.11063859932783406No Hit
GTAACTTCCAACTACAAACTGATCAATACCC5280.1100135224954734No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5210.1085550098866319No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5000.10417947206010737No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4950.10313767733950631No Hit
ACTACCGACCCGGATGCAGCGGCTTCCGCGA4880.10167916473066481No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG4860.10126244684242437No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)