FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007923498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454967
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41680.9161103992157672No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT36010.7914859759059448No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33890.7448891897654116No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG20910.45959377273516544No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA20420.4488237608441931No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG17040.37453265841258815No Hit
GTGCAGGACGCCACCGTTGGCGCAGAAAAAG16040.35255304230856305No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG14740.3239795413733304No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG13330.29298828266665494No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG13240.2910101172172927No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12600.2769431629107166No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC11740.258040693061255No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11660.256282323772933No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11640.2558427314508525No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT11370.24990823510276572No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10480.23034637677018335No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG9090.19979471038558838No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8990.19759674877518588No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8920.19605817564790412No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7620.16748467471267148No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7240.15913242059314192No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6880.15121975879569285No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC6780.14902179718529035No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6330.13913096993847907No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6260.1375923968111973No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6030.13253708510727152No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC5960.13099851197998974No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5890.129459938852708No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5400.11868992696173568No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5320.11693155767341368No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5310.11671176151237343No Hit
ACCACCCTGGGTCGTAACTGCTACAACCTGT5260.11561278070717215No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA5240.11517318838509168No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5090.11187624596948789No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5040.11077726516428663No Hit
CAGAACAAATACCAGCTGACCGATCTGAAGG4890.10748032274868287No Hit
GTAACTTCCAACTACAAACTGATCAATACCC4860.10682093426556212No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4780.10506256497724012No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4640.1019854187226766No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)