FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923500

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923500
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484906
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT39900.8228398906179755No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35890.7401434504831864No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG23630.4873109427394175No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA21200.43719813737095437No Hit
GTGCAGGACGCCACCGTTGGCGCAGAAAAAG17960.3703810635463368No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG17160.35388302062667815No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG17080.35223321633471233No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG14140.29160290860496674No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG13980.288303300021035No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC13360.27551731675829955No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT13000.26809319744445315No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12780.263556235641547No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC12110.2497391246963329No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12110.2497391246963329No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11410.23530333714163157No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10330.2130309792000924No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9720.2004512214738527No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG9560.19715161288992095No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9410.19405822984248494No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8800.1814784721162452No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC8060.16621778241556096No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7810.16106214400316762No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7310.15075086717838096No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7290.1503384161053895No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6780.1398209137441071No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6600.13610885408718393No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC6520.13445904979521806No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6350.1309532156747906No Hit
ACCACCCTGGGTCGTAACTGCTACAACCTGT6030.12435399850692713No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5770.11899213455803806No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5650.11651742812008926No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA5630.1161049770470978No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5590.11528007490111485No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5560.11466139829162765No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5500.11342404507265326No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5320.10971198541573006No Hit
CAGAACAAATACCAGCTGACCGATCTGAAGG5260.10847463219675565No Hit
GTAACTTCCAACTACAAACTGATCAATACCC5250.10826840666025993No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5080.10476257253983247No Hit
ACTACCGACCCGGATGCAGCGGCTTCCGCGA5000.1031127682478666No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)