FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007923502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461833
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39980.86568088464878No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT36750.7957421838629981No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33500.7253704261064065No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG21480.46510318664971967No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA20440.4425842241676104No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG16640.36030339971374936No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG16270.35229184575376815No Hit
GTGCAGGACGCCACCGTTGGCGCAGAAAAAG16100.34861086150188486No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG13610.29469526863606543No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG12670.2743415910080051No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12510.27087713524152673No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12160.2632986382523553No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT11950.2587515400588524No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11810.2557201412631839No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC11580.2507399860988712No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10440.22605573876271295No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9690.20981610235734563No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG9310.20158801991195952No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9270.2007219059703399No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8310.17993517137146978No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC7540.16326247799529267No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7250.15698315191855064No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6950.15048729735640373No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6730.14572367067749598No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6520.14117657248399312No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC6270.13576336034887068No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6150.1331650185240119No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5930.12840139184510418No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5420.1173584390894544No Hit
ACCACCCTGGGTCGTAACTGCTACAACCTGT5320.11519315423540544No Hit
CAGAACAAATACCAGCTGACCGATCTGAAGG5310.11497662575000055No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5280.11432704029378585No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5240.11346092635216626No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5120.11086258452730749No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5020.10869729967325852No Hit
GTAACTTCCAACTACAAACTGATCAATACCC4980.10783118573163893No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4890.10588242936299486No Hit
ACTACCGACCCGGATGCAGCGGCTTCCGCGA4880.10566590087758994No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA4870.10544937239218505No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT4830.10458325845056546No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)